⚖️ Protein Tools

Protein Molecular Weight Calculator

Calculate the molecular weight of any protein from its amino acid sequence. Results in Da and kDa with full residue composition.

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Protein Molecular Weight Calculator

FREE TOOL

Accepted: single-letter IUPAC codes (A, C, D, E, F, G, H, I, K, L, M, N, P, Q, R, S, T, V, W, Y). FASTA headers and spaces are ignored automatically.

Each disulfide bond reduces MW by 2.016 Da (loss of 2H).

📊 Molecular Weight Results

How to Use the Protein Molecular Weight Calculator

  1. Enter or paste your protein amino acid sequence in single-letter code (e.g. MKTAYIAK…) into the text box.
  2. Alternatively, upload a plain text or FASTA file — FASTA headers (lines starting with >) are removed automatically.
  3. Click Calculate Molecular Weight.
  4. Results show total MW in Daltons (Da) and kiloDaltons (kDa), residue count, and a full amino acid composition table.

About Protein Molecular Weight

Protein molecular weight (MW) is the sum of the molecular weights of all amino acid residues in the sequence, plus one water molecule (18.02 Da) for the free N- and C-termini.

Each amino acid has a unique residue mass (the mass after losing water during peptide bond formation). These residue masses, as defined by NIST and used in proteomics databases, are used in this calculator.

Results are given in Daltons (Da) and kiloDaltons (kDa). For most recombinant proteins expressed in E. coli or mammalian cells, the molecular weight ranges from 10 kDa to 200 kDa.

Note: This calculator uses monoisotopic residue masses based on average atomic weights. Post-translational modifications (glycosylation, phosphorylation, etc.) are not included.

Amino Acid Residue Masses Used

The following average residue masses (Da) are used for calculation:

A=71.08, R=156.19, N=114.10, D=115.09, C=103.14, E=129.12, Q=128.13, G=57.05, H=137.14, I=113.16, L=113.16, K=128.17, M=131.20, F=147.18, P=97.12, S=87.08, T=101.10, W=186.21, Y=163.18, V=99.13